I'm having the same issue, but Cubase fails to even recognise Analogue Factory for me. It shows it as a missing plug-in and I have to reselect it from the VST list. The plug-in is installed in exactly the same place as it was previously (not that that should make any difference). Then when it loads, its shows the last preset, not the preset used originally in the project (my tunes sound even worse than they normally do now
).