Hi and welcome to Arturia forums?
I suggest you connect a pedal to the controllers dedicated sustain input. Then set your controller up in Analog Lab standalone application (outside a host).
If/ when it work, then shift pedal.
If/ when that work, then try to connect a pedal to another input on your controller, and set the parameters correct for that to work.
Please consult your controller manual to use the different connections, and remember to read the note boxes too.
Do the same with both controllers.
If/ when this works, then you know the controllers and the pedals work, in any combination.
Then you can try to make your controllers and pedals within your DAW/ Mainstage.
I don't have a Arturia controller, and i'm on Windows. But i think that you in mainstage perhaps need to assign controls.
Hope this helps.