It's working here - I tested it right now: starting with an init patch, selecting the Ladder for VCO 1, recording some notes, doing the play+rec trick, entering mod values with step button + mod amount knob, assigning SeqMod to Ladder filter cutoff at 100%, setting Ladder resonance high to clearly hear the modulation. This works, and the mod values will stick, also across a save/load cycle.
(BTW, the bug seem to be consistently triggered by having been in Record mode)