Basically I want to be able to assign the controls on a synth working within AL with midi CC's
Sorry, I meant for the full synth, "not within Analog Laboratory".
As Antoine stated, this feature is not available when working within Laboratory.
When you open a synth within Laboratory, the parameters are forced mapped to the fixed Laboratory controls: Filter Cutoff, Resonance, ...
The key parameters mapping changes according to the presets.
So, for instance, on many Jupiter-8 presets, Key Parameter 2 is mapped to Cross-Modulation. The default CC for Key Parameter 2 is CC#19, therefore, for those presets, CC19 controls Cross-Modulation when you open the Jupiter-8V within Laboratory.
Of course, on Analog Laboratory itself, you can re-assign the CCs mapped to the Analog Laboratory parameters, f.i. which CC controls Key parameter 2 (the default mapping is designed to match the Analog Experience keyboard).
I understand this is not exactly what you are asking for, but that's as close as it gets in the current version.