Hi Asinla,
I‘m not using Logic, but in Live it‘s the same thing. If you use Polybrute Connect, it shuts down midi cc communication, but apparently uses its own communication protocol. All controller movement is then being recorded as automation. If you want to record midi cc data from all the knobs, you have to close PBC and enable the sending of midi cc data in the Polybrute Settings (Midi->Control Change I believe).
Then the Polybrute sends midi cc for all knobs. But be aware: In this mode the Morphèe data is being recorded as midi cc, but the Polybrute won’t react to it during play back. Why? No clue.
Cheers
Daniel