The hardware setup is:
A Matrixbrute
a class compliant audio interface, and power supply
a "Camera Connection Kit" (CCK), which is a lightning to USB adapter, or just a USB C cable, if you have a newer ipad.
a midi cable, if the audio interface has 5 pin midi out, OR if not, a USB hub.
2x 1/4" guitar cables.
Ipad (or iphone and good eyes), with SynthJacker and AudioLayer installed.
You plug all of the things together, run the matrixbrute audio to the audio interface. If using 5 pin midi to "play" the matrixbrute from SynthJacker, run the midi cable from the audio interface MIDI out, to the Matrixbrute MIDI in. If you want to use the USB midi on the Matrixbrute, you will need a USB hub, to combine the audio interface and matrixbrute USB cable to the ipad, before the CCK. The ipad's are particular about how much power they provide, so the audio interface should have its own power supply, or, if using the USB hub, it should be a powered hub with wall wart.
To get SynthJacker set up to sample the Matrixbrute, click the + in the upper left corner, to make a new project. In the main screen, choose Source>External Instrument. Find your midi port under "Midi Destination", change your Midi channnel if the Brute is set to a channel other than 1, and pick your audio input. Name your sound. Under "Notes", decide the range of the keys you want to sample- hint, C2 to C6 is the middle range of the MxB's keyboard. Choose how close you want the notes in "Semitones Between Notes"- the more notes you use, the more "analog" it will sound, but will take longer to sample and take up more space on the ipad. There's no shame in only sampling one note per octave, or, you can do say, a minor 3rd (3 semitones), or go for ultimate analog capture and do every single note! As well, you can choose to do velocity layers, it will do a separate sampling process up the keyboard at each velocity level you tell it, which can get extensive, but if you use velocity, a few layers can give your sampled instrument better feel. In the sample player, it can do velocity to volume, or filter (it has its own filter), so no need to do velocity layers if you just need volume dynamics. If you don't need velocity layers, just pick one layer, at 127 velocity, and it will just record one pass through the keyboard.
Under "Timing", choose how long you want the notes to be able to last. Don't be afraid to make it long, I like using a little more disk space, rather than having to go in to AudioLayer, and make loop points for the sustain part of the note, in each sample. Listen to how long your sound's release is, and set "Note Decay" accordingly, so your release doesn't get cut off by the next note.
You can do a dry run, and play the sequence before recording, to see if you set everything up right. You should be able to hear the matrixbrute playing through the sequence, and the notes lasting as long as you want, and the note release lasting the right length/not getting cut off, and not a ton of empty space before the next note. Be sure to get a good level on the audio. When you're satisfied, hit record, and it does its auto sampling thing. Can take a break and come back in 5 minutes (or longer, if you're doing an extensive sampling thing).
Synthjacker stores the files in its own folder in the iOS "Files" app. you can get to this folder from other apps, like our sample player, AudioLayer.
Note, under the settings for SynthJacker there is a part where you can change the naming arrangement, I don’t think I needed to change anything, but left it set to “Patch-Velocity-Note”, and Audio Layer could map the samples automatically, just by looking at the sample’s name.